HPVDetector

Running HPVDetector in GUI mode:

HPV Detector can be executed with GUI by running HPVdetector_GUI from Linux/UNIX shell:
     > ./HPVdetector_GUI
     Or
     > bash HPVdetector_GUI

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Upon successful execution, HPVDetector GUI will pop-up with 12 options for user selection. User can easily select required options using point-and-click interface and clicking on OK button will start running HPVDetector.
     Step-1: Provide the sample ID
     Step-2: Select sequencing type from Exome, Genome or Trenscriptome
     Step-3: Select detection mode from QuickDetect or Integration
     Step-4: Select input fastq file (forward reads fastq)
     Step-5: Select input fastq file (reverse reads fastq)
     Step-6: Select BWA executable
  Step-7: Set the number of CPU threads as per your system (most modern CPUs have at least two cores/threads)
     Step-8: Select directory where Picard Tools are installed
     Step-9: Select directory where HPV_index is stored
     Step-10: Select directory where Human-HPV_index is stored
     Step-11: Select directory where Human-HPV Annotation files are stored
     Step-12: Select a directory where output files should be stored

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After selecting appropriate options, program can be executed by clinking on OK button. Progress can be monitored on screen and after completion, program will point to respective output files.

 

 

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